References

Altschul SF, Gish W, Miller W, Myers EW, and Lipman DJ (1990). Basic local alignment search tool. J Mol Biol 215, 403-10.

Altschul SF, Madden TL, Schaffer AA etal. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-402.

Apweiler R, Attwood TK, Bairoch A etal. (2001). The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res 29, 37-40.

Attwood TK, Croning MD, Flower DR et al. (2000). PRINTS-S: the database formerly known as PRINTS. Nucleic Acids Res 28, 225-7.

Attwood TK and Parry-Smith DJ (1999). Introduction to Bioinformatics, (1st edition) Cell and Molecular Biology in Action Series: Longman Limited, Harlow, UK.

Bairoch A and Apweiler R (2000). The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 28, 45-48.

Barker WC, Garavelli JS, Hou Z etal. (2001). Protein information resource: a community resource for expert annotation of protein data. Nucleic Acids Res 29, 29-32.

Bateman A, Birney E, Durbin R, Eddy SR, Finn RD, and Sonnhammer EL (1999). Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. Nucleic Acids Res 27, 260-2.

Becamel C, Figge A, Poliak S et al. (2001). Interaction of serotonin 5-hydroxytryptamine type 2C receptors with PDZ10 of the multi-PDZ domain protein MUPP1. J Biol Chem 276, 12 974-82.

Beukers MW, Kristiansen I, IJzerman AP, and Edvardsen I (1999). TinyGRAP database: a bioinformatics tool to mine G-protein-coupled receptor mutant data. Trends Pharmacol Sci 20, 475-7.

Birney E and Durbin R (2000). Using GeneWise in the Drosophila annotation experiment. Genome Res 10, 547-8.

Boguski MS, Lowe TM, and Tolstoshev CM (1993). dbEST—database for "expressed sequence tags". Nat Genet4, 332-3.

Calver AR, Robbins MJ, Cosio C et al. (2001). The C-terminal domains of the GABA(b) receptor subunits mediate intracellular trafficking but are not required for receptor signaling. J Neurosci 21, 1203-10.

Chambers JK, Macdonald LE, Sarau HM etal. (2000). A G protein-coupled receptor for UDP-glucose. J Biol Chem 275, 10 767-71.

Cho KO, Hunt CA, and Kennedy MB (1992). The rat brain postsynaptic density fraction contains a homolog of the Drosophila discs-large tumor suppressor protein. Neuron 9, 929-42.

Corpet F, Servant F, Gouzy J, and Kahn D (2000). ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons. Nucleic Acids Res 28, 267-9.

Cserzo M, Bernassau JM, Simon I, and Maigret B (1994). New alignment strategy for transmembrane proteins. J Mol Biol 243, 388-96.

Duret L and Abdeddaim S (2000). Multiple alignments for structural, functional, or phylogenetic analyses of homologous sequences, In (eds, D. Higgins and W. Taylor) Bioinformatics: Sequence, Structure and Databanks, Oxford University Press, Oxford UK, pp. 51-76.

Felsenstein J (2000). PHYLIP (Phylogeny Inference Package), Version 3.6, Department of Genetics, University of Washington, Seattle.

Gentles AJ and Karlin S (1999). Why are human G-protein-coupled receptors predominantly intronless? Trends Genet 15, 47-9.

Gibas C and Jambeck P (2001). Developing Bioinformatic Computer Skills, First edition, O'Reilly & Associates Inc., Sebastopol, California.

Harris NL (1997). Genotator: a workbench for sequence annotation. GenomeRes 7, 754-62.

Hill J, Duckworth M, Murdock P etal. (2001). Molecular cloning and functional characterization of MCH2, a novel human MCH receptor. J Biol Chem 276, 20 125-9.

Hirokawa T, Boon-Chieng S, and Mitaku S (1998). SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14, 378-9.

Horn F, van der Wenden EM, Oliveira L, IJzerman AP, and Vriend G (2000). Receptors coupling to G proteins: is there a signal behind the sequence? Proteins 41, 448-59.

Hough LB (2001). Genomics meets histamine receptors: new subtypes, new receptors. Mol Pharmacol 59,415-19.

HuLA, Tang Y, Miller WE etal. (2000). Beta 1-adrenergic receptor association with PSD-95. Inhibition of receptor internalization and facilitation of beta 1-adrenergic receptor interaction with N-methyl-D-aspartate receptors. J Biol Chem 275, 38 659-66.

Jiang X, Dreano M, Buckler DR et al. (1995). Structural predictions for the ligand-binding region of glycoprotein hormone receptors and the nature of hormone-receptor interactions. Structure 3, 1341-53.

Jones KA, Borowsky B, Tamm JA etal. (1998). GABA(B) receptors function as a heteromeric assembly of the subunits GABA(B)R1 and GABA(B)R2. Nature 396, 674-9.

Kammerer RA, Frank S, Schulthess T, Landwehr R, Lustig A, and Engel J (1999). Heterodimerization of a functional GABAB receptor is mediated by parallel coiled-coil alpha-helices. Biochemistry 38, 13 263-9.

Kaupmann K, Malitschek B, Schuler V et al. (1998). GABA(B)-receptor subtypes assemble into functional heteromeric complexes. Nature 396, 683-7.

Kawai J, Shinagawa A, Shibata K et al. (2001). Functional annotation of a full-length mouse cDNA collection. Nature 409, 685-90.

Kozak M (1996). Interpreting cDNA sequences: some insights from studies on translation. Mamm Genome 7, 563-74.

Kuner R, Kohr G, Grunewald S, Eisenhardt G, Bach A, and Kornau HC (1999). Role of heteromer formation in GABAB receptor function. Science 283, 74-7.

KyteJand DoolittleRF (1982). Asimple method for displaying the hydropathic character of a protein. J Mol Biol 157, 105-32.

Lander ES, Linton LM, Birren B etal. (2001). Initial sequencing and analysis of the human genome. Nature 409, 860-921.

Lipman DJ and Pearson WR (1985). Rapid and sensitive protein similarity searches. Science 227, 1435-41.

Ma D, Zerangue N, Lin YF et al. (2001). Role of ER export signals in controlling surface potassium channel numbers. Science 291, 316-19.

Makalowski W, Zhang J, and Boguski MS (1996). Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences. Genome Res 6, 846-57.

Margeta-Mitrovic M, Jan YN, and Jan LY (2000). A trafficking checkpoint controls GABA(B) receptor heterodimerization. Neuron 27, 97-106.

Marinissen MJ and Gutkind JS (2001). G-protein-coupled receptors and signaling networks: emerging paradigms. Trends Pharmacol Sci 22, 368-76.

Moller S, Vilo J, and Croning MDR (2001). Prediction ofthe coupling specificity of G protein-coupled receptors to their G proteins. Bioinformatics 17, Suppl. 1, S174-S181.

Nakai K and Horton P (1999). PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci 24, 34-6.

Nielsen H, Brunak S, and von Heijne G (1999). Machine learning approaches for the prediction of signal peptides and other protein sorting signals. Protein Eng 12, 3-9.

Nolan PM, Peters J, Strivens M et al. (2000). A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse. NatGenet25, 440-3.

Oakley RH, Laporte SA, Holt JA, Barak LS, and Caron MG (2001). Molecular determinants underlying the formation of stable intracellular G protein-coupled receptor-beta-arrestin complexes after receptor endocytosis*. J Biol Chem 276, 19 452-60.

Oldenhof J, Ray A, Vickery R, and Van Tol HH (2001). SH3 ligands in the dopamine D3 receptor. Cell Signal 13,411-16.

Oldenhof J, Vickery R, Anafi M et al. (1998). SH3 binding domains in the dopamine D4 receptor. Biochemistry 37, 15 726-36.

PageRD (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput ApplBiosci 12,357-8.

Palczewski K, Kumasaka T, Hori T et al. (2000). Crystal structure of rhodopsin: A G protein-coupled receptor. Science 289, 739-45.

Ren R, Mayer BJ, Cicchetti P, and Baltimore D (1993). Identification of a ten-amino acid proline-rich SH3 binding site. Science 259, 1157-61.

Rice P, Longden I, and Bleasby A (2000). EMBOSS: the european molecular biology open software suite. Trends Genet 16, 276-7.

Robbins MJ, Michalovich D, Hill J etal. (2000). Molecular cloning and characterization of two novel retinoic acid- inducible orphan G-protein-coupled receptors (GPRC5B and GPRC5C). Genomics 67, 8-18.

Roche KW, Tu JC, Petralia RS, Xiao B, Wenthold RJ, and Worley PF (1999). Homer 1b regulates the trafficking of group I metabotropic glutamate receptors. J Biol Chem 274, 25 953-7.

Sailer AW, Sano H, Zeng Z et al. (2001). Identification and characterization of a second melanin-concentrating hormone receptor, MCH-2R. Proc Natl Acad Sci USA 98, 7564-9.

Sakurai T, Amemiya A, Ishii M etal. (1998). Orexins and orexin receptors: a family of hypothalamic neuropeptides and G protein-coupled receptors that regulate feeding behavior. Cell 92, 573-85.

Schultz J, Milpetz F, Bork P, and Ponting CP (1998). SMART, a simple modular architecture research tool: identification of signaling domains. Proc Natl Acad Sci USA, 95, 5857-64.

Schwartz S, Zhang Z, Frazer KA etal. (2000). PipMaker—a web server for aligning two genomic DNA sequences. Genome Res 10, 577-86.

Swofford DL (1999). PAUP* (Phylogenetic Analysis Using Parsimony (*and other methods), Version 4, Sinauer Associates, Sunderland, MA.

Tang Y, Hu LA, Miller WE et al. (1999). Identification of the endophilins (SH3p4/p8/p13) as novel binding partners for the beta1-adrenergic receptor. Proc Natl Acad Sci USA 96, 12 559-64.

Teasdale RD and Jackson MR (1996). Signal-mediated sorting of membrane proteins between the endoplasmic reticulum and the golgi apparatus. Annu Rev Cell Dev Biol 12, 27-54.

Thompson JD, Higgins DG, and Gibson TJ (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-80.

Wess J (1998). Molecular basis of receptor/G-protein-coupling selectivity. Pharmacol Ther 80, 231-64.

White JH, Wise A, Main MJ et al. (1998). Heterodimerization is required for the formation of a functional GABA(B) receptor. Nature 396, 679-82.

Wittenberger T, Schaller HC, and Hellebrand S (2001). An expressed sequence tag (EST) data mining strategy succeeding in the discovery of new G-protein coupled receptors. J Mol Biol 307, 799-813.

Wolf E, Kim PS, and Berger B (1997). MultiCoil: a program for predicting two- and three-stranded coiled coils. Protein Sci 6, 1179-89.

Wu CH, Xiao C, Hou Z, Huang H, and Barker WC (2001). iProClass: an integrated, comprehensive and annotated protein classification database. Nucleic Acids Res 29, 52-4.

Xiao B, Tu JC, and Worley PF (2000). Homer: a link between neural activity and glutamate receptor function. Curr Opin Neurobiol 10, 370-4.

Zerangue N, Schwappach B, Jan YN, and Jan LY (1999). A new ER trafficking signal regulates the subunit stoichiometry of plasma membrane K(ATP) channels. Neuron 22, 537-48.

Zhu Y, Michalovich D, Wu H etal. (2001). Cloning, expression, and pharmacological characterization of a novel human histamine receptor. Mol Pharmacol 59, 434-41.

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